io.github.danielLuo2/bioharbor

BioHarbor

Is the BioHarbor MCP server down? No. It answered initialize and tools/list in the probe of 2026-10-27.

Run real bioinformatics from your AI agent. Reliable, reproducible, on your own GPUs.

alive probed 2026-11-14 · unchanged since 2026-10-27

12tools

3.7ktokens in Claude Opus 5.5

1.8 %of Claude's 200k window

1.5×the median server

3.2 sto initialize

8 msto list tools

Run it: uvx bioharbor@0.1.6 (stdio, probed in a container with the network off)
Host: pypi.org
Reports itself as: bioharbor 0.1.6
Capabilities: prompts, resources, tools
Instructions: 351 characters
Of a 1M window: 0.4 % of a 1M context window
Count: 3.7k tokens in Claude Opus 5.5, exact, measured 2026-10-27. With the Claude Code prefix mcp__…__ on each tool name: 3.8k. The o200k_base estimate is 2.2k. Counted again when the tool definitions change. Method.
Repository: https://github.com/danielLuo2/bioharbor
Registry: active, updated 2026-10-10 · registry entry
Changes: 2 recorded, reachable in 2 of them. A row is added when the result, the tool count or the cost changes.

Most expensive tools

The Claude column scales the o200k estimate of each tool by this server's ratio of exact to estimate, 1.69×.

Tool	≈ Claude tokens	o200k estimate	Share of this server
search_homologs	541	320	15 %
find_orfs	470	278	13 %
get_job	374	221	10 %
read_file	335	198	9 %
list_jobs	299	177	8 %

Other registry entries on pypi.org, the ones next to this name; all of them.

Fray — WAF Security Testing MCP Server io.github.dalisecurity/fray · crashed on start
Open Markets io.github.danchev/openmarkets · alive
SearXNG io.github.danchev/searxng · alive
SpherePay io.github.danchev/spherepay · needs env
io.github.danielcregg/rosettahub-mcp-server · needs mcp<2
Bambu Studio (unofficial) io.github.danielefinocchiaro/unofficial-bambu-mcp · alive
Disney Lorcana MCP io.github.danielenricocahall/lorcana-mcp · install failed
io.github.danielsousaoliveira/cal-auto-python · needs args

Servers that mention bioinformatics or reproducible.

DJZS Trust MCP ai.djzs/trust-mcp · alive
Make Effects app.makefx/make-effects · not MCP
Agenshive com.agenshive/agenshive · needs auth
Tarot MCP Server by RoxyAPI com.roxyapi/tarot · alive
Pancake — Verifiable Backtests for AI Agents com.usepancake/pancake-mcp · not found
Bio-Data Parser io.github.Evozim/bio-data-parser · not found
Agent Pulse io.github.Janicezhhhh/agent-pulse · server error
Quesen Deterministic Agent Decision Layer io.github.Shxnque/quesen · not found

We add a row when the result changes. A server with no change keeps its last row.

Probed	Result	Init	Tools	Claude	o200k
2026-10-27 06:54	alive	1.5 s	12	3.7k	2.2k
2026-10-20 06:41	alive	3.2 s	12		2.2k

The result of the latest probe, the tool count and the token cost. The feed has an entry for every probe that changed them.

Stops answering, comes back, tool set or cost changes. One confirmation mail first, a stop link in every mail.